Cis-meQTLs across different cancer types

In cis-meQTL analysis, we identified 8,028,964 cis-meQTLs at FDR < 0.05 and |r|>=0.3 in 23 cancer types for users to search or browse.

 

e.g., "BLCA"
e.g., "rs11047888"
e.g., "cg25763538"
e.g., "KRAS"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Methylation probe
Methylation position (hg19)
Gene symbol
Beta
t-stat
r
P-valule
Display
BLCA rs13023744 chr2:99738224 C/T cg15544633 chr2:99771531 LIPT1;TSGA10 1.18 32.97 0.86 1.58E-113 Box Plot
BLCA rs13026928 chr2:99804278 G/A cg15544633 chr2:99771531 LIPT1;TSGA10 1.17 33.25 0.86 1.46E-114 Box Plot
BLCA rs13030961 chr2:99799520 C/G cg15544633 chr2:99771531 LIPT1;TSGA10 1.17 32.88 0.86 3.39E-113 Box Plot
BLCA rs1343743 chr1:227183125 C/T cg10327440 chr1:227177885 CDC42BPA -1.14 -31.72 -0.85 7.63E-109 Box Plot
BLCA rs1343744 chr1:227183022 C/T cg10327440 chr1:227177885 CDC42BPA -1.14 -29.52 -0.83 2.13E-100 Box Plot
BLCA rs138094768 chr1:227179501 AATAAGCACCT/A cg10327440 chr1:227177885 CDC42BPA -1.14 -31.73 -0.85 7.01E-109 Box Plot
BLCA rs139286568 chr1:227185288 A/T cg10327440 chr1:227177885 CDC42BPA -1.14 -31.72 -0.85 7.63E-109 Box Plot
BLCA rs143239691 chr1:227185047 C/T cg10327440 chr1:227177885 CDC42BPA -1.14 -31.72 -0.85 7.63E-109 Box Plot
BLCA rs144035016 chr1:227186192 C/T cg10327440 chr1:227177885 CDC42BPA -1.14 -31.72 -0.85 7.63E-109 Box Plot
BLCA rs1445685 chr5:13665834 A/G cg27586797 chr5:13664584 NA 1.08 30.49 0.84 3.83E-104 Box Plot
BLCA rs1445689 chr5:13680535 G/A cg27586797 chr5:13664584 NA -1.1 -30.41 -0.84 8.05E-104 Box Plot
BLCA rs1612616 chr2:30676422 C/T cg12454169 chr2:30669597 LCLAT1 1.24 30.7 0.84 6.17E-105 Box Plot
BLCA rs1614348 chr2:30676618 G/A cg12454169 chr2:30669597 LCLAT1 1.24 30.7 0.84 6.17E-105 Box Plot
BLCA rs1616259 chr2:30676878 A/G cg12454169 chr2:30669597 LCLAT1 1.24 30.58 0.84 1.68E-104 Box Plot
BLCA rs1662958 chr2:30676296 T/G cg12454169 chr2:30669597 LCLAT1 1.24 30.7 0.84 6.17E-105 Box Plot